Registered Endpoints
Wikidata
wikidata
https://query.wikidata.org/sparql
Crowd-sourced knowledge graph — broad biological, chemical, and biomedical entity coverage with cross-references to most major databases.
PubChem
pubchem
https://qlever.cs.uni-freiburg.de/api/pubchem
NCBI PubChem compounds, substances, bioassays, and references served via QLever — fast lookup for chemical structures and identifiers.
UniProt
uniprot
https://sparql.uniprot.org/sparql
Curated protein sequence and function database (Swiss-Prot + TrEMBL) with disease, GO, and cross-database annotations.
ChEMBL
chembl
https://chemblmirror.rdf.bigcat-bioinformatics.org/sparql
EBI ChEMBL bioactivity database — drugs, targets, assays, and standard activity measurements. Public mirror is intermittently slow.
BioBricks KG (local)
biobricks-kg
http://35.224.43.147:8080/sparql
BioBricks-curated knowledge graph — 165M triples across 53 source datasets (ctdbase, tox21, ecotox, consensus-bioactivity, coconut, bindingdb, chembl-smiles, and more). Served on-prem via Virtuoso on ws4.