KG

Registered Endpoints

Wikidata wikidata
https://query.wikidata.org/sparql

Crowd-sourced knowledge graph — broad biological, chemical, and biomedical entity coverage with cross-references to most major databases.

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PubChem pubchem
https://qlever.cs.uni-freiburg.de/api/pubchem

NCBI PubChem compounds, substances, bioassays, and references served via QLever — fast lookup for chemical structures and identifiers.

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UniProt uniprot
https://sparql.uniprot.org/sparql

Curated protein sequence and function database (Swiss-Prot + TrEMBL) with disease, GO, and cross-database annotations.

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ChEMBL chembl
https://chemblmirror.rdf.bigcat-bioinformatics.org/sparql

EBI ChEMBL bioactivity database — drugs, targets, assays, and standard activity measurements. Public mirror is intermittently slow.

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BioBricks KG (local) biobricks-kg
http://35.224.43.147:8080/sparql

BioBricks-curated knowledge graph — 165M triples across 53 source datasets (ctdbase, tox21, ecotox, consensus-bioactivity, coconut, bindingdb, chembl-smiles, and more). Served on-prem via Virtuoso on ws4.

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